PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa014250
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family LSD
Protein Properties Length: 133aa    MW: 14286.7 Da    PI: 8.1529
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58679504PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-27930PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD147.43.2e-15630125
    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
               CggC+tlL+Y+rGA+sVRC++C+ V
  Lsa014250  6 CGGCHTLLMYTRGATSVRCSCCHIV 30
               ***********************98 PP

2zf-LSD145.11.6e-144467124
    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
               C +Crt+L+YP+GApsV+Ca+C+ 
  Lsa014250 44 CANCRTMLMYPYGAPSVKCAVCHY 67
               9*********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.4E-14332IPR005735Zinc finger, LSD1-type
Gene3DG3DSA:3.90.10.108.1E-5568No hitNo description
PfamPF069431.3E-12630IPR005735Zinc finger, LSD1-type
SuperFamilySSF486959.14E-5666IPR011031Multihaem cytochrome
TIGRFAMsTIGR010531.6E-134170IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-134468IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MAQLICGGCH TLLMYTRGAT SVRCSCCHIV NLAPVANQLA QVNCANCRTM LMYPYGAPSV  60
KCAVCHYITN VNMSNGRVPI PMQPPGSMPS TSTEMPHFHT QTVVVENPMS VDESGKLVSN  120
VVVGVTTEKK QIS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075549.13e-70PREDICTED: protein LSD1 isoform X1
SwissprotP940774e-54LSD1_ARATH; Protein LSD1
TrEMBLA0A118J7F34e-76A0A118J7F3_CYNCS; Zinc finger, LSD1-type
STRINGGLYMA08G13630.13e-64(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.72e-55LSD family protein